Transcript: ENST00000372577.2 NUP188-001

Description

nucleoporin 188kDa [Source:HGNC Symbol;Acc:17859]

Gene Synonyms

KIAA0169, hNup188

Location

Chromosome 9: 131,709,978-131,769,375 forward strand.

About this transcript

This transcript has 44 exons, is annotated with 12 domains and features, is associated with 28949 variant alleles and maps to 1285 oligo probes.

Gene

This transcript is a product of gene ENSG00000095319.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372577.2	NUP188-001	5689	1749aa	ENSP00000361658.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35156	Q5SRE5	NM_015354.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000550219.1	NUP188-010	886	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467044.1	NUP188-011	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491502.1	NUP188-005	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465344.1	NUP188-008	400	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491990.1	NUP188-013	381	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477069.1	NUP188-002	2941	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487952.1	NUP188-012	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495726.1	NUP188-003	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464729.1	NUP188-004	408	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485158.1	NUP188-006	392	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 44, Coding exons: 44, Transcript length: 5,689 bps, Translation length: 1,749 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5SRE5

CCDS

This transcript is a member of the Human CCDS set: CCDS35156

Version

ENST00000372577.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054529 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000372577.2 NUP188-001

Summary