Transcript: ENST00000368881.4 PSMD4-002

Description

proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Source:HGNC Symbol;Acc:9561]

Gene Synonyms

AF, AF-1, ASF, MCB1, Rpn10, S5A, pUB-R5

Location

Chromosome 1: 151,227,185-151,239,935 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 5883 variant alleles and maps to 439 oligo probes.

Gene

This transcript is a product of gene ENSG00000159352.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368884.3	PSMD4-001	1350	377aa	ENSP00000357879.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS991	A6PVX3 P55036	NM_002810.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000368881.4	PSMD4-002	1333	380aa	ENSP00000357876.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVX3 Q5VWC4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000437736.1	PSMD4-014	787	203aa	ENSP00000414499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVX3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445776.1	PSMD4-008	703	193aa	ENSP00000388089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000453615.1	PSMD4-010	371	84aa	ENSP00000396633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000427779.1	PSMD4-013	649	39aa	ENSP00000406408.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469786.2	PSMD4-011	408	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476855.1	PSMD4-006	1232	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462970.1	PSMD4-004	900	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461434.1	PSMD4-012	801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491857.1	PSMD4-009	461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470396.1	PSMD4-007	338	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,333 bps, Translation length: 380 residues

Version

ENST00000368881.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000034410 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000368881.4 PSMD4-002

Summary