Transcript: ENST00000367569.2 SF3B5-001

Description

splicing factor 3b, subunit 5, 10kDa [Source:HGNC Symbol;Acc:21083]

Gene Synonyms

MGC3133, SF3B10, SF3b10, Ysf3

Location

Chromosome 6: 144,416,018-144,416,754 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 4 domains and features, is associated with 473 variant alleles and maps to 215 oligo probes.

Gene

This transcript is a product of gene ENSG00000169976.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367569.2	SF3B5-001	737	86aa	ENSP00000356541.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5204	Q9BWJ5	NM_031287.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 737 bps, Translation length: 86 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BWJ5

CCDS

This transcript is a member of the Human CCDS set: CCDS5204

Version

ENST00000367569.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs1053634, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-MKK.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript having same CDS:	OTTHUMT00000042537 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000367569.2 SF3B5-001

Summary