Transcript: ENST00000367387.4 LHX9-004

Description

LIM homeobox 9 [Source:HGNC Symbol;Acc:14222]

Location

Chromosome 1: 197,886,529-197,899,273 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 22 domains and features, is associated with 6285 variant alleles and maps to 376 oligo probes.

Gene

This transcript is a product of gene ENSG00000143355.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367387.4	LHX9-004	2503	397aa	ENSP00000356357.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1393	Q9NQ69	NM_020204.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000367390.3	LHX9-001	7413	388aa	ENSP00000356360.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30962	Q9NQ69	NM_001014434.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000337020.2	LHX9-002	2336	330aa	ENSP00000337969.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQ69	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000561173.1	LHX9-007	2144	336aa	ENSP00000453064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL54	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000367391.1	LHX9-003	1623	321aa	ENSP00000356361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQ69	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000367388.3	LHX9-005	754	119aa	ENSP00000356358.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000606127.1	LHX9-009	425	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475727.1	LHX9-006	259	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,503 bps, Translation length: 397 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQ69

CCDS

This transcript is a member of the Human CCDS set: CCDS1393

Version

ENST00000367387.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000086547 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000367387.4 LHX9-004

Summary