Transcript: ENST00000366661.4 TTC13-001

Description

tetratricopeptide repeat domain 13 [Source:HGNC Symbol;Acc:26204]

Gene Synonyms

FLJ22584

Location

Chromosome 1: 231,041,989-231,114,584 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 22 domains and features, is associated with 28531 variant alleles and maps to 661 oligo probes.

Gene

This transcript is a product of gene ENSG00000143643.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366661.4	TTC13-001	3253	860aa	ENSP00000355621.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1588	Q69YR0 Q8NBP0 Q9H659	NM_024525.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414259.1	TTC13-201	3116	807aa	ENSP00000416631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PGV4 Q9H659	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000366662.4	TTC13-002	3112	806aa	ENSP00000355622.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44332	Q8NBP0	NM_001122835.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000522821.1	TTC13-008	558	186aa	ENSP00000430385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000522399.1	TTC13-007	529	166aa	ENSP00000428622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHB3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000486879.2	TTC13-006	492	123aa	ENSP00000428447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YB10	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481976.2	TTC13-005	1062	255aa	ENSP00000430280.1	Nonsense mediated decay		E5RG15	-	-
ENST00000466507.2	TTC13-004	865	150aa	ENSP00000431120.1	Nonsense mediated decay		E5RJP6	-	-
ENST00000471302.2	TTC13-010	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519379.1	TTC13-009	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 3,253 bps, Translation length: 860 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NBP0

CCDS

This transcript is a member of the Human CCDS set: CCDS1588

Version

ENST00000366661.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000092229 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000366661.4 TTC13-001

Summary