Transcript: ENST00000348943.3 HNRNPM-001

Description

heterogeneous nuclear ribonucleoprotein M [Source:HGNC Symbol;Acc:5046]

Gene Synonyms

CEAR, HNRNPM4, HNRPM, HNRPM4, HTGR1, NAGR1, hnRNP M

Location

Chromosome 19: 8,509,651-8,553,998 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 24 domains and features, is associated with 22559 variant alleles and maps to 771 oligo probes.

Gene

This transcript is a product of gene ENSG00000099783.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000325495.4	HNRNPM-002	2494	730aa	ENSP00000325376.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12203	P52272 Q7KYM9 Q8TCM5	NM_005968.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000348943.3	HNRNPM-001	2568	691aa	ENSP00000325732.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12204	P52272 Q8TCM5	NM_031203.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000597270.1	HNRNPM-007	1147	383aa	ENSP00000470635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000600092.1	HNRNPM-003	1086	352aa	ENSP00000470932.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DEG4 M0R019	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000594907.1	HNRNPM-017	1078	357aa	ENSP00000472789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2T0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000596295.1	HNRNPM-012	910	214aa	ENSP00000472599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000601645.1	HNRNPM-009	832	275aa	ENSP00000471339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R0N3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000596984.1	HNRNPM-010	664	219aa	ENSP00000470017.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000598999.1	HNRNPM-015	409	116aa	ENSP00000469681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598367.1	HNRNPM-008	298	99aa	ENSP00000469906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYL3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000600806.1	HNRNPM-004	2373	99aa	ENSP00000471530.1	Nonsense mediated decay		M0R0Y6	-	-
ENST00000602219.1	HNRNPM-006	1809	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000597081.1	HNRNPM-016	1004	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000598603.1	HNRNPM-011	784	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593293.1	HNRNPM-014	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597813.1	HNRNPM-013	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,568 bps, Translation length: 691 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52272

CCDS

This transcript is a member of the Human CCDS set: CCDS12204

Version

ENST00000348943.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000460893 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000348943.3 HNRNPM-001

Summary