Transcript: ENST00000343735.4 CLDN18-001

Description

claudin 18 [Source:HGNC Symbol;Acc:2039]

Gene Synonyms

SFTA5, SFTPJ

Location

About this transcript

This transcript has 5 exons, is annotated with 16 domains and features, is associated with 13196 variant alleles and maps to 540 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000183605.5	CLDN18-002	3520	261aa	ENSP00000183605.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3095	P56856	NM_016369.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000343735.4	CLDN18-001	3431	261aa	ENSP00000340939.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33862	P56856	NM_001002026.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000479660.1	CLDN18-003	2039	146aa	ENSP00000419732.1	Nonsense mediated decay		F8WEY4	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,431 bps, Translation length: 261 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P56856

CCDS

This transcript is a member of the Human CCDS set: CCDS33862

Version

ENST00000343735.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000357198 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.