Transcript: ENST00000341923.6 RABEP1-002

Description

rabaptin, RAB GTPase binding effector protein 1 [Source:HGNC Symbol;Acc:17677]

Gene Synonyms

RAB5EP, RABPT5, RABPT5A, neurocrescin, rabaptin-5

Location

Chromosome 17: 5,185,782-5,286,518 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 30 domains and features, is associated with 47857 variant alleles and maps to 593 oligo probes.

Gene

This transcript is a product of gene ENSG00000029725.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262477.6	RABEP1-201	5387	862aa	ENSP00000262477.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45592	Q15276	NM_004703.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000408982.2	RABEP1-202	5288	829aa	ENSP00000386150.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42243	Q15276	NM_001083585.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000546142.2	RABEP1-001	4315	862aa	ENSP00000437701.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45592	Q15276	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000537505.1	RABEP1-203	2875	819aa	ENSP00000445408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H355	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000341923.6	RABEP1-002	2490	829aa	ENSP00000339569.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42243	Q15276	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000572250.1	RABEP1-007	583	153aa	ENSP00000466981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574568.1	RABEP1-006	578	192aa	ENSP00000460980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L456	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000575991.1	RABEP1-004	551	109aa	ENSP00000459550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2B8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000570487.1	RABEP1-005	461	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000575475.1	RABEP1-003	2768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,490 bps, Translation length: 829 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15276

CCDS

This transcript is a member of the Human CCDS set: CCDS42243

Version

ENST00000341923.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000439351 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000341923.6 RABEP1-002

Summary