Transcript: ENST00000336023.5 TUBA1B-001

Description

tubulin, alpha 1b [Source:HGNC Symbol;Acc:18809]

Gene Synonyms

K-ALPHA-1

Location

Chromosome 12: 49,521,565-49,525,178 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 36 domains and features, is associated with 1999 variant alleles and maps to 632 oligo probes.

Gene

This transcript is a product of gene ENSG00000123416.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336023.5	TUBA1B-001	1627	451aa	ENSP00000336799.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31792	C9JDS9 F8VRK0 F8VRZ4 F8VWV9 F8VX09 F8VXZ7 P68363	NM_006082.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000550367.1	TUBA1B-010	835	246aa	ENSP00000449325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRK0 F8VVB9 F8VWV9 F8VX09 F8VXZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547476.1	TUBA1B-007	584	75aa	ENSP00000449748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRK0 F8VX09 F8VXZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552984.1	TUBA1B-009	574	49aa	ENSP00000448648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRK0 F8VXZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549870.1	TUBA1B-011	565	81aa	ENSP00000449460.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRK0 F8VWV9 F8VX09 F8VXZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547765.1	TUBA1B-006	1875	49aa	ENSP00000448045.1	Nonsense mediated decay		F8VU66	-	-
ENST00000332858.6	TUBA1B-002	3198	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551324.1	TUBA1B-008	840	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,627 bps, Translation length: 451 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P68363

CCDS

This transcript is a member of the Human CCDS set: CCDS31792

Version

ENST00000336023.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000409005 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000336023.5 TUBA1B-001

Summary