Transcript: ENST00000333535.4 SCN5A-014

Description

sodium channel, voltage-gated, type V, alpha subunit [Source:HGNC Symbol;Acc:10593]

Gene Synonyms

CDCD2, CMD1E, CMPD2, HB1, HB2, HBBD, HH1, ICCD, IVF, LQT3, Nav1.5, PFHB1, SSS1, VF1

Location

Chromosome 3: 38,589,557-38,691,119 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 64 domains and features, is associated with 46013 variant alleles and maps to 839 oligo probes.

Gene

This transcript is a product of gene ENSG00000183873.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000413689.1	SCN5A-001	8504	2016aa	ENSP00000410257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46799	A3EY20 A3EY21 H9KVD2 Q8WTS0 Q8WWN5	NM_001160160.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443581.1	SCN5A-202	8501	2015aa	ENSP00000397915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46797	A3EY20 A3EY21 Q14524 Q8WTQ6 Q8WWN5	NM_198056.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000333535.4	SCN5A-014	8456	2016aa	ENSP00000328968.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46796	A3EY20 A3EY21 Q14524 Q8WTQ6 Q8WWN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425664.1	SCN5A-201	8450	1998aa	ENSP00000416634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46798	A3EY20 A3EY21 E9PG18 Q8WTS0 Q8WWN5	NM_001099405.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423572.2	SCN5A-003	8362	2015aa	ENSP00000398266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46797	A3EY20 A3EY21 Q14524 Q8WTQ6 Q8WWN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451551.2	SCN5A-203	8343	1962aa	ENSP00000388797.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54569	A3EY20 A3EY21 K4DIA1 Q8WTS0 Q8WWN5	NM_001160161.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414099.2	SCN5A-004	8303	1998aa	ENSP00000398962.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46798	A3EY20 A3EY21 E9PG18 Q8WTS0 Q8WWN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455624.2	SCN5A-002	7170	1983aa	ENSP00000399524.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54570	A3EY21 E9PHB6 Q8WTS0 Q8WWN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450102.2	SCN5A-008	6284	1962aa	ENSP00000403355.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54569	A3EY20 A3EY21 K4DIA1 Q8WTS0 Q8WWN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449557.2	SCN5A-010	5898	1962aa	ENSP00000413996.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3EY20 A3EY21 Q8WTQ6 Q8WWN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000327956.6	SCN5A-006	335	65aa	ENSP00000333674.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3EY21	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464652.1	SCN5A-011	591	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491944.1	SCN5A-005	1382	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476683.1	SCN5A-013	774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 8,456 bps, Translation length: 2,016 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14524

CCDS

This transcript is a member of the Human CCDS set: CCDS46796

Version

ENST00000333535.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377958 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000333535.4 SCN5A-014

Summary