Transcript: ENST00000325167.5 CHMP6-001

Description

charged multivesicular body protein 6 [Source:HGNC Symbol;Acc:25675]

Gene Synonyms

FLJ11749, VPS20

Location

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 4988 variant alleles and maps to 337 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000325167.5	CHMP6-001	1664	201aa	ENSP00000317468.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11774	I3L3E4 Q96FZ7	NM_024591.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000572778.1	CHMP6-003	737	224aa	ENSP00000461098.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L4A1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572525.1	CHMP6-002	611	113aa	ENSP00000460389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3E4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571457.1	CHMP6-004	552	173aa	ENSP00000461238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L4G8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,664 bps, Translation length: 201 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96FZ7

CCDS

This transcript is a member of the Human CCDS set: CCDS11774

Version

ENST00000325167.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000438215 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.