Transcript: ENST00000318801.4 SYNGR1-002

Description

synaptogyrin 1 [Source:HGNC Symbol;Acc:11498]

Location

Chromosome 22: 39,745,930-39,774,386 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 13255 variant alleles and maps to 301 oligo probes.

Gene

This transcript is a product of gene ENSG00000100321.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328933.5	SYNGR1-001	4391	233aa	ENSP00000332287.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13989	O43759	NM_004711.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000318801.4	SYNGR1-002	1353	191aa	ENSP00000318845.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13990	O43759	NM_145731.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000381535.4	SYNGR1-005	1295	192aa	ENSP00000370946.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13991	O43759	NM_145738.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000406293.3	SYNGR1-007	564	169aa	ENSP00000385447.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCD7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000216155.7	SYNGR1-006	497	118aa	ENSP00000216155.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A283	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415332.1	SYNGR1-003	928	144aa	ENSP00000412442.1	Nonsense mediated decay		F8WCE4	-	-
ENST00000489206.1	SYNGR1-004	1999	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,353 bps, Translation length: 191 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43759

CCDS

This transcript is a member of the Human CCDS set: CCDS13990

Version

ENST00000318801.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000259132 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000318801.4 SYNGR1-002

Summary