Transcript: ENST00000318524.6 NFX1-004

Description

nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:7803]

Gene Synonyms

MGC20369, NFX2, TEG-42, Tex42

Location

Chromosome 9: 33,290,543-33,348,721 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 20 domains and features, is associated with 24893 variant alleles and maps to 452 oligo probes.

Gene

This transcript is a product of gene ENSG00000086102.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379540.3	NFX1-001	4604	1120aa	ENSP00000368856.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6538	Q12986	NM_002504.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000379521.4	NFX1-002	3609	1024aa	ENSP00000368836.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6539	Q12986	NM_147133.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000318524.6	NFX1-004	3513	833aa	ENSP00000317695.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6540	Q12986	NM_147134.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000463421.1	NFX1-003	987	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466971.1	NFX1-006	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466359.1	NFX1-005	391	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,513 bps, Translation length: 833 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12986

CCDS

This transcript is a member of the Human CCDS set: CCDS6540

Version

ENST00000318524.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000052072 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000318524.6 NFX1-004

Summary