Transcript: ENST00000311111.6 RPL38-001

Description

ribosomal protein L38 [Source:HGNC Symbol;Acc:10349]

Gene Synonyms

L38

Location

Chromosome 17: 72,199,792-72,206,794 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 4066 variant alleles and maps to 245 oligo probes.

Gene

This transcript is a product of gene ENSG00000172809.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311111.6	RPL38-001	1170	70aa	ENSP00000309830.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11696	J3KSP2 P63173	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000533498.1	RPL38-006	532	70aa	ENSP00000434243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11696	J3KSP2 P63173	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000439590.2	RPL38-003	431	70aa	ENSP00000390279.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11696	J3KSP2 P63173	NM_001035258.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000534490.1	RPL38-007	429	64aa	ENSP00000462837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSP2 J3KT73	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000584577.1	RPL38-008	344	67aa	ENSP00000463312.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSP2 J3QL01	NM_000999.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000528433.2	RPL38-005	169	21aa	ENSP00000462580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSP2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530646.1	RPL38-002	2450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529123.2	RPL38-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,170 bps, Translation length: 70 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P63173

CCDS

This transcript is a member of the Human CCDS set: CCDS11696

Version

ENST00000311111.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387450 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000311111.6 RPL38-001

Summary