Transcript: ENST00000306862.2 C5orf34-001

Description

chromosome 5 open reading frame 34 [Source:HGNC Symbol;Acc:24738]

Gene Synonyms

FLJ32363

Location

About this transcript

This transcript has 13 exons, is annotated with 2 domains and features, is associated with 13011 variant alleles and maps to 521 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306862.2	C5orf34-001	2507	638aa	ENSP00000303490.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3946	B4E0D7 E9PBC3 Q96MH7	NM_198566.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000509489.1	C5orf34-004	962	228aa	ENSP00000424486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E0D7 E9PBC3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503655.2	C5orf34-005	511	126aa	ENSP00000426724.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514462.1	C5orf34-002	1208	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506213.1	C5orf34-003	833	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,507 bps, Translation length: 638 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96MH7

CCDS

This transcript is a member of the Human CCDS set: CCDS3946

Version

ENST00000306862.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253843 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.