Transcript: ENST00000306085.6 TRIM56-001

Description

tripartite motif containing 56 [Source:HGNC Symbol;Acc:19028]

Gene Synonyms

RNF109

Location

About this transcript

This transcript has 3 exons, is annotated with 23 domains and features, is associated with 3016 variant alleles and maps to 379 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306085.6	TRIM56-001	3613	755aa	ENSP00000305161.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43625	Q9BRZ2	NM_030961.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000412507.1	TRIM56-002	1129	305aa	ENSP00000404186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JI91	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487252.1	TRIM56-004	735	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467847.1	TRIM56-003	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 3,613 bps, Translation length: 755 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BRZ2

CCDS

This transcript is a member of the Human CCDS set: CCDS43625

Version

ENST00000306085.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347185 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.