Transcript: ENST00000298875.4 CPSF2-001

Description

cleavage and polyadenylation specific factor 2, 100kDa [Source:HGNC Symbol;Acc:2325]

Gene Synonyms

CPSF100, KIAA1367

Location

About this transcript

This transcript has 16 exons, is annotated with 17 domains and features, is associated with 17884 variant alleles and maps to 674 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298875.4	CPSF2-001	5301	782aa	ENSP00000298875.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9902	B3KN45 G3V3T7 Q9P2I0	NM_017437.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000555244.1	CPSF2-007	806	269aa	ENSP00000451390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000553427.1	CPSF2-004	715	80aa	ENSP00000451418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3T7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554290.1	CPSF2-005	558	62aa	ENSP00000452503.1	Nonsense mediated decay		G3V5T3	-	-
ENST00000556622.1	CPSF2-006	469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 14, Transcript length: 5,301 bps, Translation length: 782 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P2I0

CCDS

This transcript is a member of the Human CCDS set: CCDS9902

Version

ENST00000298875.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000412123 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.