Transcript: ENST00000297273.4 CASD1-001

Description

CAS1 domain containing 1 [Source:HGNC Symbol;Acc:16014]

Gene Synonyms

C7orf12, FLJ21213, FLJ21879, NBLA04196

Location

About this transcript

This transcript has 18 exons, is annotated with 20 domains and features, is associated with 20094 variant alleles and maps to 645 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297273.4	CASD1-001	3942	797aa	ENSP00000297273.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5636	C9JDR3 Q96PB1	NM_022900.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000447923.1	CASD1-004	532	125aa	ENSP00000396261.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDR3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443644.1	CASD1-005	641	45aa	ENSP00000389718.1	Nonsense mediated decay		F8WDQ7	-	-
ENST00000417387.1	CASD1-006	352	103aa	ENSP00000402708.1	Nonsense mediated decay		F8WDW8	-	-
ENST00000471944.1	CASD1-002	2263	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489196.1	CASD1-003	2199	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,942 bps, Translation length: 797 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PB1

CCDS

This transcript is a member of the Human CCDS set: CCDS5636

Version

ENST00000297273.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255216 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.