Transcript: ENST00000296328.4 UBXN7-001

Description

UBX domain protein 7 [Source:HGNC Symbol;Acc:29119]

Gene Synonyms

KIAA0794, UBXD7

Location

Chromosome 3: 196,074,533-196,159,345 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 17 domains and features, is associated with 38895 variant alleles and maps to 711 oligo probes.

Gene

This transcript is a product of gene ENSG00000163960.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296328.4	UBXN7-001	10568	489aa	ENSP00000296328.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43191	C9JAT7 C9JD50 F5GYB1 O94888	NM_015562.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000535858.1	UBXN7-201	1398	341aa	ENSP00000440716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAT7 F5GYB1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000428095.1	UBXN7-006	1173	327aa	ENSP00000397256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAT7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000381887.3	UBXN7-007	375	125aa	ENSP00000371311.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000413584.1	UBXN7-008	374	76aa	ENSP00000404778.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD50	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000429160.1	UBXN7-003	3158	75aa	ENSP00000397238.1	Nonsense mediated decay		F8WB69	-	-
ENST00000493566.1	UBXN7-002	921	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 10,568 bps, Translation length: 489 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94888

CCDS

This transcript is a member of the Human CCDS set: CCDS43191

Version

ENST00000296328.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000340938 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000296328.4 UBXN7-001

Summary