Transcript: ENST00000296098.4 TRIM54-001

Description

tripartite motif containing 54 [Source:HGNC Symbol;Acc:16008]

Gene Synonyms

MURF, MURF-3, MURF3, RNF30, muRF3

Location

About this transcript

This transcript has 10 exons, is annotated with 20 domains and features, is associated with 11430 variant alleles and maps to 396 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296098.4	TRIM54-001	2027	400aa	ENSP00000296098.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1745	Q9BYV2	NM_032546.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000380075.2	TRIM54-002	1967	358aa	ENSP00000369415.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1746	Q9BYV2	NM_187841.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000485306.1	TRIM54-004	705	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488321.1	TRIM54-003	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,027 bps, Translation length: 400 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BYV2

CCDS

This transcript is a member of the Human CCDS set: CCDS1745

Version

ENST00000296098.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000214198 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.