Transcript: ENST00000294638.5 LHX8-001

Description

LIM homeobox 8 [Source:HGNC Symbol;Acc:28838]

Gene Synonyms

LHX7, Lhx7

Location

About this transcript

This transcript has 10 exons, is annotated with 22 domains and features, is associated with 14778 variant alleles and maps to 347 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294638.5	LHX8-001	2373	356aa	ENSP00000294638.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30756	Q68G74 Q6SV70 Q9BYB7	NM_001001933.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000356261.3	LHX8-002	1764	346aa	ENSP00000348597.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58008	Q68G74 Q6SV70 Q9BYB7	NM_001256114.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000559413.1	LHX8-003	314	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000607240.1	LHX8-004	2244	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,373 bps, Translation length: 356 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q68G74

CCDS

This transcript is a member of the Human CCDS set: CCDS30756

Version

ENST00000294638.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000026700 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.