Transcript: ENST00000284770.5 PDLIM3-001

Description

PDZ and LIM domain 3 [Source:HGNC Symbol;Acc:20767]

Gene Synonyms

ALP

Location

Chromosome 4: 186,422,851-186,456,662 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 13894 variant alleles and maps to 415 oligo probes.

Gene

This transcript is a product of gene ENSG00000154553.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284770.5	PDLIM3-001	1766	364aa	ENSP00000284770.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3844	Q53GG5	NM_014476.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000284767.5	PDLIM3-201	1888	189aa	ENSP00000284767.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q53GG5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000284771.6	PDLIM3-002	1672	316aa	ENSP00000284771.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47172	Q53GG5	NM_001114107.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000512293.1	PDLIM3-005	581	42aa	ENSP00000421972.1	Nonsense mediated decay		D6RAF1	-	-
ENST00000505886.1	PDLIM3-006	571	42aa	ENSP00000425138.1	Nonsense mediated decay		D6RAF1	-	-
ENST00000514142.1	PDLIM3-004	5137	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504011.1	PDLIM3-003	2819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514308.1	PDLIM3-011	906	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512380.1	PDLIM3-010	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515261.1	PDLIM3-007	622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504355.1	PDLIM3-008	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,766 bps, Translation length: 364 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q53GG5

CCDS

This transcript is a member of the Human CCDS set: CCDS3844

Version

ENST00000284770.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000360499 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000284770.5 PDLIM3-001

Summary