Transcript: ENST00000274811.4 RNF44-001

Description

ring finger protein 44 [Source:HGNC Symbol;Acc:19180]

Gene Synonyms

KIAA1100

Location

Chromosome 5: 175,953,698-175,964,421 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 10 domains and features, is associated with 6977 variant alleles and maps to 556 oligo probes.

Gene

This transcript is a product of gene ENSG00000146083.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000274811.4	RNF44-001	4155	432aa	ENSP00000274811.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4404	B4DYE0 Q7L0R7	NM_014901.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000537487.1	RNF44-201	1647	351aa	ENSP00000440352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DYE0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000506378.1	RNF44-007	848	226aa	ENSP00000425253.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513029.1	RNF44-002	1647	46aa	ENSP00000427604.1	Nonsense mediated decay		D6RHW8	-	-
ENST00000504160.1	RNF44-003	887	45aa	ENSP00000424699.1	Nonsense mediated decay		D6RAW5	-	-
ENST00000509404.1	RNF44-008	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504434.1	RNF44-004	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508478.1	RNF44-005	662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515051.1	RNF44-006	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 4,155 bps, Translation length: 432 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7L0R7

CCDS

This transcript is a member of the Human CCDS set: CCDS4404

Version

ENST00000274811.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253156 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000274811.4 RNF44-001

Summary