Transcript: ENST00000269881.3 CALR3-001

Description

calreticulin 3 [Source:HGNC Symbol;Acc:20407]

Gene Synonyms

CMH19, CRT2, CT93, FLJ25355, MGC26577

Location

About this transcript

This transcript has 9 exons, is annotated with 18 domains and features, is associated with 8429 variant alleles and maps to 339 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000269881.3	CALR3-001	1292	384aa	ENSP00000269881.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12344	Q96L12	NM_145046.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000600762.1	CALR3-002	425	142aa	ENSP00000471533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000602234.1	CALR3-003	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,292 bps, Translation length: 384 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96L12

CCDS

This transcript is a member of the Human CCDS set: CCDS12344

Version

ENST00000269881.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000461089 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.