Transcript: ENST00000265634.3 NPTX2-001

Description

neuronal pentraxin II [Source:HGNC Symbol;Acc:7953]

Gene Synonyms

NARP, NP-II, NP2

Location

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 6128 variant alleles and maps to 325 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265634.3	NPTX2-001	2700	431aa	ENSP00000265634.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5657	P47972	NM_002523.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000466102.1	NPTX2-002	843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,700 bps, Translation length: 431 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P47972

CCDS

This transcript is a member of the Human CCDS set: CCDS5657

Version

ENST00000265634.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000334982 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.