Transcript: ENST00000265562.4 PTPN23-001

Description

protein tyrosine phosphatase, non-receptor type 23 [Source:HGNC Symbol;Acc:14406]

Gene Synonyms

DKFZP564F0923, HD-PTP, HDPTP, KIAA1471, PTP-TD14

Location

Chromosome 3: 47,422,510-47,454,931 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 36 domains and features, is associated with 15177 variant alleles and maps to 806 oligo probes.

Gene

This transcript is a product of gene ENSG00000076201.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265562.4	PTPN23-001	5244	1636aa	ENSP00000265562.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2754	B4DST5 Q9H3S7	NM_015466.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431726.1	PTPN23-201	5119	1510aa	ENSP00000387825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DST5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000456221.1	PTPN23-006	592	169aa	ENSP00000396328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD91	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602307.1	PTPN23-003	5119	64aa	ENSP00000473266.1	Nonsense mediated decay		R4GMM7	-	-
ENST00000477276.2	PTPN23-008	882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495653.1	PTPN23-009	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462998.1	PTPN23-007	260	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 5,244 bps, Translation length: 1,636 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H3S7

CCDS

This transcript is a member of the Human CCDS set: CCDS2754

Version

ENST00000265562.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257492 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000265562.4 PTPN23-001

Summary