Transcript: ENST00000265361.3 SEMA3C-001

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:HGNC Symbol;Acc:10725]

Gene Synonyms

SEMAE, SemE

Location

Chromosome 7: 80,371,854-80,548,667 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 16 domains and features, is associated with 78310 variant alleles and maps to 805 oligo probes.

Gene

This transcript is a product of gene ENSG00000075223.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265361.3	SEMA3C-001	5174	751aa	ENSP00000265361.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5596	Q75L25 Q75MX0 Q99985	NM_006379.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000419255.2	SEMA3C-003	2415	751aa	ENSP00000411193.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5596	Q75L25 Q75MX0 Q99985	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000544525.1	SEMA3C-202	2415	769aa	ENSP00000445649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1Z7 Q75L25 Q75MX0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000536800.1	SEMA3C-201	1318	233aa	ENSP00000438258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DRL8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000458729.1	SEMA3C-002	1318	40aa	ENSP00000393825.1	Nonsense mediated decay		F8WEP9	-	-
ENST00000427167.1	SEMA3C-005	785	63aa	ENSP00000399891.1	Nonsense mediated decay		F2Z2Y0	-	-
ENST00000411788.1	SEMA3C-006	577	63aa	ENSP00000395398.1	Nonsense mediated decay		F2Z2Y0	-	-
ENST00000487621.1	SEMA3C-007	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470581.1	SEMA3C-004	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459652.1	SEMA3C-008	387	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475955.1	SEMA3C-009	383	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 5,174 bps, Translation length: 751 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99985

CCDS

This transcript is a member of the Human CCDS set: CCDS5596

Version

ENST00000265361.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253279 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000265361.3 SEMA3C-001

Summary