Transcript: ENST00000258418.5 CAB39-001

Description

calcium binding protein 39 [Source:HGNC Symbol;Acc:20292]

Gene Synonyms

CGI-66, MO25

Location

Chromosome 2: 231,577,560-231,685,790 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 48386 variant alleles and maps to 492 oligo probes.

Gene

This transcript is a product of gene ENSG00000135932.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258418.5	CAB39-001	3826	341aa	ENSP00000258418.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2478	A8K8L7 Q53RN7 Q9Y376	NM_016289.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000409788.3	CAB39-002	1626	341aa	ENSP00000386238.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2478	A8K8L7 Q53RN7 Q9Y376	NM_001130849.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000410084.3	CAB39-003	1324	341aa	ENSP00000386642.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2478	A8K8L7 Q53RN7 Q9Y376	NM_001130850.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000484398.1	CAB39-006	552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478152.1	CAB39-004	654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493540.1	CAB39-005	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 3,826 bps, Translation length: 341 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y376

CCDS

This transcript is a member of the Human CCDS set: CCDS2478

Version

ENST00000258418.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256955 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000258418.5 CAB39-001

Summary