Transcript: ENST00000238497.5 VPS4B-001

Description

vacuolar protein sorting 4 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:10895]

Gene Synonyms

SKD1, SKD1B, VPS4-2, VPS42

Location

Chromosome 18: 61,056,423-61,089,696 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 17 domains and features, is associated with 14511 variant alleles and maps to 503 oligo probes.

Gene

This transcript is a product of gene ENSG00000119541.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000238497.5	VPS4B-001	3324	444aa	ENSP00000238497.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11983	O75351	NM_004869.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000591519.1	VPS4B-003	551	128aa	ENSP00000465846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKZ3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588059.1	VPS4B-004	1252	111aa	ENSP00000465944.1	Nonsense mediated decay		K7EL71	-	-
ENST00000591383.1	VPS4B-007	701	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588323.1	VPS4B-008	463	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591475.1	VPS4B-006	2008	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589604.1	VPS4B-005	1672	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,324 bps, Translation length: 444 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75351

CCDS

This transcript is a member of the Human CCDS set: CCDS11983

Version

ENST00000238497.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256198 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000238497.5 VPS4B-001

Summary