Transcript: ENST00000229307.4 NANOG-001

Description

Nanog homeobox [Source:HGNC Symbol;Acc:20857]

Gene Synonyms

FLJ12581, FLJ40451

Location

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 3706 variant alleles and maps to 325 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229307.4	NANOG-001	2101	305aa	ENSP00000229307.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31736	F5GZI2 J7H4F6 Q9H9S0	NM_024865.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000526286.1	NANOG-002	870	289aa	ENSP00000435288.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9H9S0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000541267.1	NANOG-004	836	186aa	ENSP00000444434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZI2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526434.1	NANOG-003	561	53aa	ENSP00000433428.1	Nonsense mediated decay		E9PL07	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,101 bps, Translation length: 305 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H9S0

CCDS

This transcript is a member of the Human CCDS set: CCDS31736

Version

ENST00000229307.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387480 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.