Transcript: ENST00000222256.4 RAB3A-001

Description

RAB3A, member RAS oncogene family [Source:HGNC Symbol;Acc:9777]

Location

About this transcript

This transcript has 5 exons, is annotated with 16 domains and features, is associated with 3668 variant alleles and maps to 390 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222256.4	RAB3A-001	1528	220aa	ENSP00000222256.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12372	M0R257 P20336 S4R3Q3	NM_002866.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000464076.3	RAB3A-002	1253	125aa	ENSP00000474603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3Q3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000481914.2	RAB3A-003	579	115aa	ENSP00000472335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R257	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000515410.1	RAB3A-004	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,528 bps, Translation length: 220 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P20336

CCDS

This transcript is a member of the Human CCDS set: CCDS12372

Version

ENST00000222256.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000268056 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.