Transcript: ENST00000221494.5 SF3A2-001

Description

splicing factor 3a, subunit 2, 66kDa [Source:HGNC Symbol;Acc:10766]

Gene Synonyms

PRP11, PRPF11, Prp11, SAP62, SF3a66

Location

Chromosome 19: 2,236,520-2,248,678 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 7044 variant alleles and maps to 518 oligo probes.

Gene

This transcript is a product of gene ENSG00000104897.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000221494.5	SF3A2-001	1946	464aa	ENSP00000221494.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12084	K7EP23 Q15428	NM_007165.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000586396.2	SF3A2-002	543	135aa	ENSP00000466634.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP23	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592314.1	SF3A2-007	885	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592839.2	SF3A2-003	724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589118.1	SF3A2-005	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590034.2	SF3A2-004	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587637.2	SF3A2-008	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591121.2	SF3A2-006	406	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,946 bps, Translation length: 464 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15428

CCDS

This transcript is a member of the Human CCDS set: CCDS12084

Version

ENST00000221494.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000451268 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000221494.5 SF3A2-001

Summary