Transcript: ENST00000220751.4 RIPK2-001

Description

receptor-interacting serine-threonine kinase 2 [Source:HGNC Symbol;Acc:10020]

Gene Synonyms

CARD3, CARDIAK, CCK, GIG30, RICK, RIP2

Location

About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 12896 variant alleles and maps to 571 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220751.4	RIPK2-001	2584	540aa	ENSP00000220751.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6247	O43353	NM_003821.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540020.1	RIPK2-201	1740	403aa	ENSP00000441623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43353	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000522965.1	RIPK2-002	1916	68aa	ENSP00000429271.1	Nonsense mediated decay		E7ERW9 Q6Q322	-	-
ENST00000517696.1	RIPK2-003	572	70aa	ENSP00000427736.1	Nonsense mediated decay		E5RGK6	-	-
ENST00000518673.1	RIPK2-004	481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,584 bps, Translation length: 540 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43353

CCDS

This transcript is a member of the Human CCDS set: CCDS6247

Version

ENST00000220751.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000375686 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.