Transcript: ENST00000216039.5 JOSD1-001

Description

Josephin domain containing 1 [Source:HGNC Symbol;Acc:28953]

Gene Synonyms

JSPH1, KIAA0063, dJ508I15.2

Location

Chromosome 22: 39,081,548-39,096,672 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 6913 variant alleles and maps to 611 oligo probes.

Gene

This transcript is a product of gene ENSG00000100221.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216039.5	JOSD1-001	3648	202aa	ENSP00000216039.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13976	B0QY55 B0QY56 B0QY57 B0QY58 Q15040	NM_014876.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000456626.1	JOSD1-003	843	61aa	ENSP00000405182.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY58	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000545590.1	JOSD1-012	647	154aa	ENSP00000444798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417712.1	JOSD1-002	623	62aa	ENSP00000393131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY55 B0QY58	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427389.1	JOSD1-011	571	123aa	ENSP00000410010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY55 B0QY56 B0QY57 B0QY58	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412832.1	JOSD1-010	529	104aa	ENSP00000415189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY55 B0QY57 B0QY58	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462610.1	JOSD1-004	525	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490169.1	JOSD1-005	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493939.1	JOSD1-006	480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482442.1	JOSD1-009	467	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,648 bps, Translation length: 202 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15040

CCDS

This transcript is a member of the Human CCDS set: CCDS13976

Version

ENST00000216039.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000321047 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000216039.5 JOSD1-001

Summary