Transcript: ENST00000215829.3 SNRPD3-001

Description

small nuclear ribonucleoprotein D3 polypeptide 18kDa [Source:HGNC Symbol;Acc:11160]

Gene Synonyms

SMD3, Sm-D3

Location

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 8154 variant alleles and maps to 415 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000215829.3	SNRPD3-001	1763	126aa	ENSP00000215829.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13828	P62318	NM_004175.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000402849.1	SNRPD3-003	567	120aa	ENSP00000385266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJP7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000404603.1	SNRPD3-005	715	126aa	ENSP00000456090.1	Nonsense mediated decay	CCDS13828	P62318	-	-
ENST00000439775.1	SNRPD3-004	640	62aa	ENSP00000456969.1	Nonsense mediated decay		H3BT13	-	-
ENST00000468770.1	SNRPD3-002	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,763 bps, Translation length: 126 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62318

CCDS

This transcript is a member of the Human CCDS set: CCDS13828

Version

ENST00000215829.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000319813 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.