Transcript: ENST00000215793.8 SF3A1-001

Description

splicing factor 3a, subunit 1, 120kDa [Source:HGNC Symbol;Acc:10765]

Gene Synonyms

PRP21, PRPF21, Prp21, SAP114, SF3A120, SF3a120

Location

Chromosome 22: 30,727,977-30,752,936 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 26 domains and features, is associated with 11243 variant alleles and maps to 958 oligo probes.

Gene

This transcript is a product of gene ENSG00000099995.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000215793.8	SF3A1-001	5143	793aa	ENSP00000215793.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13875	Q15459	NM_005877.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000439242.1	SF3A1-201	4923	728aa	ENSP00000390336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46684	E9PAW1	NM_001005409.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000444440.1	SF3A1-011	777	259aa	ENSP00000400862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1L2	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000411423.1	SF3A1-004	548	38aa	ENSP00000412715.1	Nonsense mediated decay		F8WC79	-	-
ENST00000447376.1	SF3A1-009	418	63aa	ENSP00000397267.1	Nonsense mediated decay		F8WB66	-	-
ENST00000498259.1	SF3A1-007	875	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496189.1	SF3A1-002	693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485618.1	SF3A1-008	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463818.1	SF3A1-003	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471037.1	SF3A1-006	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471342.1	SF3A1-005	459	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 5,143 bps, Translation length: 793 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15459

CCDS

This transcript is a member of the Human CCDS set: CCDS13875

Version

ENST00000215793.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000320916 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000215793.8 SF3A1-001

Summary