Transcript: ENST00000158771.4 DERL2-001

Description

derlin 2 [Source:HGNC Symbol;Acc:17943]

Gene Synonyms

CGI-101, DER2, F-LAN-1, F-LANa, FLANA, FLANa, derlin-2

Location

Chromosome 17: 5,374,571-5,389,537 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 6400 variant alleles and maps to 499 oligo probes.

Gene

This transcript is a product of gene ENSG00000072849.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000158771.4	DERL2-001	4209	239aa	ENSP00000158771.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11073	Q9GZP9	NM_016041.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000570848.1	DERL2-008	657	144aa	ENSP00000459072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L1S8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000571971.1	DERL2-009	617	200aa	ENSP00000458296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0R8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000572834.1	DERL2-010	589	74aa	ENSP00000460671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3R8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000575605.1	DERL2-012	551	158aa	ENSP00000459083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L1T3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573637.1	DERL2-002	876	103aa	ENSP00000458448.1	Nonsense mediated decay		I3L1W3	-	-
ENST00000576551.1	DERL2-007	624	82aa	ENSP00000467794.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000571476.1	DERL2-011	570	79aa	ENSP00000461603.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574952.1	DERL2-003	501	103aa	ENSP00000459154.1	Nonsense mediated decay		I3L1W3	-	-
ENST00000571968.1	DERL2-004	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574700.1	DERL2-005	1087	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575209.1	DERL2-006	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573547.1	DERL2-013	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 4,209 bps, Translation length: 239 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZP9

CCDS

This transcript is a member of the Human CCDS set: CCDS11073

Version

ENST00000158771.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219825 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000158771.4 DERL2-001

Summary