Transcript: ENST00000406870.2 BCL6-001

Description

B-cell CLL/lymphoma 6 [Source:HGNC Symbol;Acc:1001]

Gene Synonyms

BCL5, BCL6A, LAZ3, ZBTB27, ZNF51

Location

Chromosome 3: 187,439,165-187,463,515 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 38 domains and features, is associated with 14878 variant alleles and maps to 702 oligo probes.

Gene

This transcript is a product of gene ENSG00000113916.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406870.2	BCL6-001	3569	706aa	ENSP00000384371.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3289	C9JCS5 C9JL16 P41182	NM_001706.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000232014.4	BCL6-004	2710	706aa	ENSP00000232014.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3289	C9JCS5 C9JL16 P41182	NM_001130845.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450123.2	BCL6-010	2003	650aa	ENSP00000413122.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46975	C9JCS5 C9JL16 P41182	NM_001134738.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438077.1	BCL6-007	709	104aa	ENSP00000414455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JL16	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430339.1	BCL6-008	454	121aa	ENSP00000415574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCS5 C9JL16	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419510.2	BCL6-003	4178	55aa	ENSP00000398014.2	Nonsense mediated decay		-	-	-
ENST00000496823.1	BCL6-006	1138	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480458.1	BCL6-009	342	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479110.1	BCL6-011	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470319.1	BCL6-005	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 3,569 bps, Translation length: 706 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41182

CCDS

This transcript is a member of the Human CCDS set: CCDS3289

Version

ENST00000406870.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000344202 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000406870.2 BCL6-001

Summary