Transcript: ENST00000406396.3 KDSR-001

Description

3-ketodihydrosphingosine reductase [Source:HGNC Symbol;Acc:4021]

Gene Synonyms

DHSR, FVT1, SDR35C1

Location

Chromosome 18: 60,994,959-61,034,743 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 18 domains and features, is associated with 16989 variant alleles and maps to 753 oligo probes.

Gene

This transcript is a product of gene ENSG00000119537.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406396.3	KDSR-001	5447	332aa	ENSP00000385083.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11982	Q06136	NM_002035.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000326575.5	KDSR-010	1024	268aa	ENSP00000312939.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DMX0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591902.1	KDSR-009	1011	203aa	ENSP00000468203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERC8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000592327.1	KDSR-013	553	155aa	ENSP00000467962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589592.1	KDSR-012	688	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587292.1	KDSR-005	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590056.1	KDSR-004	462	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586791.1	KDSR-002	3384	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588089.1	KDSR-011	1265	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589530.1	KDSR-008	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585456.1	KDSR-006	476	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585750.1	KDSR-007	455	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 5,447 bps, Translation length: 332 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q06136

CCDS

This transcript is a member of the Human CCDS set: CCDS11982

Version

ENST00000406396.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256200 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000406396.3 KDSR-001

Summary