Transcript: ENST00000390654.3 COL23A1-001

Description

collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:22990]

Gene Synonyms

DKFZp434K0621

Location

About this transcript

This transcript has 29 exons, is annotated with 19 domains and features, is associated with 168717 variant alleles and maps to 637 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000390654.3	COL23A1-001	3061	540aa	ENSP00000375069.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4436	Q86Y22	NM_173465.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407622.1	COL23A1-201	930	309aa	ENSP00000385092.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86Y22	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484750.1	COL23A1-002	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 3,061 bps, Translation length: 540 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86Y22

CCDS

This transcript is a member of the Human CCDS set: CCDS4436

Version

ENST00000390654.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253475 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.