Transcript: ENST00000378538.3 SPI1-001

Description

spleen focus forming virus (SFFV) proviral integration oncogene [Source:HGNC Symbol;Acc:11241]

Gene Synonyms

OF, PU.1, SFPI1, SPI-1, SPI-A

Location

About this transcript

This transcript has 5 exons, is annotated with 16 domains and features, is associated with 12252 variant alleles and maps to 366 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378538.3	SPI1-001	1403	270aa	ENSP00000367799.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7933	P17947	NM_003120.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533968.1	SPI1-002	1290	245aa	ENSP00000438846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3K6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000227163.4	SPI1-004	1168	271aa	ENSP00000227163.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44591	P17947	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533030.1	SPI1-003	661	35aa	ENSP00000443865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZ94	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,403 bps, Translation length: 270 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17947

CCDS

This transcript is a member of the Human CCDS set: CCDS7933

Version

ENST00000378538.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000316571 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.