Transcript: ENST00000367478.4 TPR-001

Description

translocated promoter region, nuclear basket protein [Source:HGNC Symbol;Acc:12017]

Location

Chromosome 1: 186,280,784-186,344,457 reverse strand.

About this transcript

This transcript has 51 exons, is annotated with 45 domains and features, is associated with 29993 variant alleles and maps to 1824 oligo probes.

Gene

This transcript is a product of gene ENSG00000047410.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367478.4	TPR-001	9708	2363aa	ENSP00000356448.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41446	P12270 Q9UE33	NM_003292.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451586.1	TPR-003	515	150aa	ENSP00000408103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SWX9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000474852.1	TPR-002	2757	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467810.1	TPR-008	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481347.1	TPR-006	2727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491783.1	TPR-004	882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492973.1	TPR-007	453	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469463.1	TPR-005	420	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 51, Coding exons: 51, Transcript length: 9,708 bps, Translation length: 2,363 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P12270

CCDS

This transcript is a member of the Human CCDS set: CCDS41446

Version

ENST00000367478.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000086353 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000367478.4 TPR-001

Summary