Transcript: ENST00000357214.5 SFPQ-001

Description

splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774]

Gene Synonyms

POMP100, PSF

Location

Chromosome 1: 35,648,533-35,658,749 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 23 domains and features, is associated with 6230 variant alleles and maps to 571 oligo probes.

Gene

This transcript is a product of gene ENSG00000116560.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357214.5	SFPQ-001	3747	707aa	ENSP00000349748.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS388	P23246 Q9BSV4	NM_005066.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470472.1	SFPQ-002	874	223aa	ENSP00000424440.1	Nonsense mediated decay		H0Y9K7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460428.1	SFPQ-003	464	88aa	ENSP00000425071.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000468598.1	SFPQ-004	2835	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466213.1	SFPQ-005	1431	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485365.1	SFPQ-007	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466745.1	SFPQ-008	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471991.1	SFPQ-009	440	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490668.1	SFPQ-010	434	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485454.1	SFPQ-006	339	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,747 bps, Translation length: 707 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P23246

CCDS

This transcript is a member of the Human CCDS set: CCDS388

Version

ENST00000357214.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000011984 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000357214.5 SFPQ-001

Summary