Transcript: ENST00000350721.4 ATR-001

Description

ataxia telangiectasia and Rad3 related [Source:HGNC Symbol;Acc:882]

Gene Synonyms

FCTCS, FRP1, MEC1, SCKL, SCKL1

Location

Chromosome 3: 142,168,079-142,297,668 reverse strand.

About this transcript

This transcript has 47 exons, is annotated with 40 domains and features, is associated with 63067 variant alleles and maps to 1396 oligo probes.

Gene

This transcript is a product of gene ENSG00000175054.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000350721.4	ATR-001	8249	2644aa	ENSP00000343741.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3124	Q13535	NM_001184.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000383101.3	ATR-201	8056	2580aa	ENSP00000372581.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RIG7 Q13535	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513291.1	ATR-002	5190	457aa	ENSP00000424355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515149.2	ATR-005	929	309aa	ENSP00000425897.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RIG7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000507148.1	ATR-003	724	100aa	ENSP00000426595.1	Nonsense mediated decay		D6RFJ6	-	-
ENST00000504521.1	ATR-013	718	80aa	ENSP00000422553.1	Nonsense mediated decay		H0Y8Y6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515810.1	ATR-014	553	39aa	ENSP00000421870.1	Nonsense mediated decay		H0Y8R8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514393.1	ATR-008	552	50aa	ENSP00000424754.1	Nonsense mediated decay		H0Y9Q8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507620.1	ATR-007	837	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511016.1	ATR-010	681	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515863.1	ATR-011	641	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515107.1	ATR-012	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 47, Coding exons: 47, Transcript length: 8,249 bps, Translation length: 2,644 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13535

CCDS

This transcript is a member of the Human CCDS set: CCDS3124

Version

ENST00000350721.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000353995 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000350721.4 ATR-001

Summary