Transcript: ENST00000346991.5 CASC5-002

Description

cancer susceptibility candidate 5 [Source:HGNC Symbol;Acc:24054]

Gene Synonyms

AF15Q14, CT29, D40, KIAA1570, KNL1, PPP1R55, Spc7, hKNL-1, hSpc105

Location

Chromosome 15: 40,886,218-40,956,540 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 10 domains and features, is associated with 33361 variant alleles and maps to 993 oligo probes.

Gene

This transcript is a product of gene ENSG00000137812.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000346991.5	CASC5-002	9573	2342aa	ENSP00000335463.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42023	Q8NG31	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399668.2	CASC5-001	7607	2316aa	ENSP00000382576.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42024	Q8NG31	NM_170589.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527044.1	CASC5-003	3211	113aa	ENSP00000432654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPJ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532406.1	CASC5-008	579	193aa	ENSP00000436851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000528975.1	CASC5-005	578	7aa	ENSP00000454087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532056.1	CASC5-006	259	10aa	ENSP00000454002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526913.1	CASC5-013	5584	1361aa	ENSP00000432565.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000534204.1	CASC5-007	565	80aa	ENSP00000453857.1	Nonsense mediated decay		H0YN41	-	-
ENST00000531626.2	CASC5-012	669	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533001.1	CASC5-004	5923	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532347.1	CASC5-010	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528967.1	CASC5-009	254	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 9,573 bps, Translation length: 2,342 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NG31

CCDS

This transcript is a member of the Human CCDS set: CCDS42023

Version

ENST00000346991.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000390224 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000346991.5 CASC5-002

Summary