Transcript: ENST00000336777.5 SSX2-001

Description

synovial sarcoma, X breakpoint 2 [Source:HGNC Symbol;Acc:11336]

Gene Synonyms

CT5.2, CT5.2A, CT5.2a, CT5.2b, HD21, HOM-MEL-40, MGC119055, MGC15364, MGC3884, SSX, SSX2A

Location

About this transcript

This transcript has 9 exons, is annotated with 6 domains and features, is associated with 486 variant alleles and maps to 1430 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336777.5	SSX2-001	1410	223aa	ENSP00000338796.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14345	Q16385 Q9NZK4	NM_003147.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337502.5	SSX2-002	1292	188aa	ENSP00000338561.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14344	Q16385	NM_175698.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476392.1	SSX2-003	677	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,410 bps, Translation length: 223 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16385

CCDS

This transcript is a member of the Human CCDS set: CCDS14345

Version

ENST00000336777.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000058899 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.