Transcript: ENST00000262053.3 ATF1-001

Description

activating transcription factor 1 [Source:HGNC Symbol;Acc:783]

Gene Synonyms

EWS-ATF1, FUS/ATF-1, TREB36

Location

About this transcript

This transcript has 7 exons, is annotated with 19 domains and features, is associated with 24127 variant alleles and maps to 469 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262053.3	ATF1-001	2181	271aa	ENSP00000262053.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8803	B4DRF9 F8VS03 F8VYN3 P18846	NM_005171.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539132.1	ATF1-201	970	136aa	ENSP00000438403.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DRF9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552487.1	ATF1-004	745	200aa	ENSP00000448921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VS03 F8VYN3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552510.1	ATF1-003	549	170aa	ENSP00000448592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VS03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551831.1	ATF1-002	970	55aa	ENSP00000448987.1	Nonsense mediated decay		F8VYE5	-	-
ENST00000549612.1	ATF1-005	568	77aa	ENSP00000448421.1	Nonsense mediated decay		F8VRN2	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,181 bps, Translation length: 271 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18846

CCDS

This transcript is a member of the Human CCDS set: CCDS8803

Version

ENST00000262053.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404285 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.