Transcript: ENST00000252486.4 APOE-001

Description

apolipoprotein E [Source:HGNC Symbol;Acc:613]

Gene Synonyms

AD2, LDLCQ5, LPG

Location

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 2262 variant alleles and maps to 412 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252486.4	APOE-001	1208	317aa	ENSP00000252486.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12647	E7ERP7 E9PEV4 J9ZVQ3 P02649 Q6LA97 Q6LBZ1	NM_000041.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425718.1	APOE-005	923	219aa	ENSP00000410423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERP7 E9PEV4 Q6LA97	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434152.1	APOE-004	864	269aa	ENSP00000413653.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERP7 E9PEV4 H0Y7L5 Q6LA97 Q6LBZ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446996.1	APOE-002	737	216aa	ENSP00000413135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEV4 Q6LA97	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485628.2	APOE-003	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,208 bps, Translation length: 317 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02649

CCDS

This transcript is a member of the Human CCDS set: CCDS12647

Version

ENST00000252486.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250865 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.