Transcript: ENST00000250448.2 FOXA1-001

Description

forkhead box A1 [Source:HGNC Symbol;Acc:5021]

Gene Synonyms

HNF3A, TCF3A

Location

About this transcript

This transcript has 2 exons, is annotated with 20 domains and features, is associated with 4620 variant alleles and maps to 254 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000250448.2	FOXA1-001	2862	472aa	ENSP00000250448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9665	B7ZAP5 P55317	NM_004496.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540786.1	FOXA1-201	1792	439aa	ENSP00000440178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZAP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553751.1	FOXA1-003	507	36aa	ENSP00000451704.1	Nonsense mediated decay		G3V4B9	-	-
ENST00000545425.2	FOXA1-002	1806	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554607.1	FOXA1-004	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557418.1	FOXA1-005	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,862 bps, Translation length: 472 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55317

CCDS

This transcript is a member of the Human CCDS set: CCDS9665

Version

ENST00000250448.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000276735 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.