Transcript: ENST00000328300.6 COL4A5-006

Description

collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:2207]

Gene Synonyms

ASLN, ATS, CA54

Location

Chromosome X: 107,683,112-107,940,771 forward strand.

About this transcript

This transcript has 53 exons, is annotated with 67 domains and features, is associated with 80107 variant alleles and maps to 1968 oligo probes.

Gene

This transcript is a product of gene ENSG00000188153.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328300.6	COL4A5-006	6483	1691aa	ENSP00000331902.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35366	B4DFF0 H0Y9R8 P29400	NM_033380.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361603.2	COL4A5-001	6469	1685aa	ENSP00000354505.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14543	B4DFF0 H0Y9R8 P29400	NM_000495.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504541.1	COL4A5-010	859	73aa	ENSP00000424845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9R8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515658.1	COL4A5-009	790	115aa	ENSP00000423520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505728.1	COL4A5-011	537	174aa	ENSP00000424137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477429.1	COL4A5-004	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510690.1	COL4A5-008	382	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483338.1	COL4A5-002	3622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470339.1	COL4A5-005	782	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489230.1	COL4A5-003	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 53, Coding exons: 53, Transcript length: 6,483 bps, Translation length: 1,691 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P29400

CCDS

This transcript is a member of the Human CCDS set: CCDS35366

Version

ENST00000328300.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000360023 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000328300.6 COL4A5-006

Summary